Protein Mimetics Library

Selected molecules able to mimic common protein motifs

8 960 compounds

Over 250 000 individual protein-protein interactions (PPIs) were identified in human proteome. Although many of these exhibit topologically complex and formidable surface areas, in many instances the successful binding is attained via a limited number of key residues ("hot spots“). There are multiple reports in the literature describing both computational and diversity-oriented approaches to developing small-molecule modulators of PPIs. Of these, non-peptidic a-helix and b-turn imetics are of particular importance due to their key role in multiple deregulated pathways leading to cancer, neurodegenerative disorders, inflammation and immunological disorders.

Typical Formats

Catalog No.
Compounds
Amount
Format
Price

Catalog No.

PML-8960-Y-0

Compounds

8 960
28 plates

Amount

≤ 300 nL of 2 mM solutions in DMSO

Plates and formats

384-well micro plates, Greiner Cat. No. 784201; 1, 2 & 23, 24 columns empty, 320 compounds per plate

Price

This email address is being protected from spambots. You need JavaScript enabled to view it.

Catalog No.

PML-8960-Y-10

Compounds

8 960
28 plates

Amount

10 µL of 10 mM DMSO stock solutions

Plates and formats

384-well microplates, Echo Qualified, first two and last two columns empty, 320 compounds per plate

Price

This email address is being protected from spambots. You need JavaScript enabled to view it.

Catalog No.

PML-8960-X-50

Compounds

8 960
112 plates

Amount

50 µL of 10 mM DMSO solutions

Plates and formats

96-well microplates, first and last columns empty, 80 compounds per plate

Price

This email address is being protected from spambots. You need JavaScript enabled to view it.

Catalog No.

PML-8960

Compounds

8 960

Amount

Custom

Plates and formats

Any custom format

Price

This email address is being protected from spambots. You need JavaScript enabled to view it.

 

Get more details

Download SD files

Protein Mimetics Library

Library code: PML-8960

Version: 29 September 2023

8 960 compounds

sublibrary of PPI-40

Library design

Traditional three residue approach

 

Alpha-helix Mimetics

Beta-turn Mimetics

Ligand-based approach

Target based approach. We carried out design of a focused compound set targeting selected alpha-helix domains and beta-turns such as mdm2-p53, mdm2-CK1α, HIF1-α , MEF2-HDAC4, HIV-1 gp41, CD81/CV, Bcl-2/Bcl-xL, etc. After the selection by virtual screening the preference was set to the structures bearing new chemotypes.

‘Traditional’ three-residue appraoch included design of compounds with unusual cores bearing regular key-residues that mimics i, i+3/i+4 and i+7-residues located on the one recognition face (‘hot spots’). In modeling a-helix interfaces, we accounted also two-face helix mimetics. For beta-turn mimetics we applied three query models with distinct types of interaction: π-π stacking, cation-π and H-bond interaction, S-π interaction. : The latter focused design exercise was exemplified by modeling the interaction between Bim BH3 domain with Mcl-1 and Bcl-2 and identifying fused polyhydrogenated aza-heterocycles with high Fsp3 character.

Ligand based approach. New chemotypes with close topology to known alpha-helix and beta-turns mimetics were selected. Shape based similarity and Pharmacophore screening were used as a main tools for the library design.

Unique Fsp3-enriched scaffolds exhibiting ladder-like cyclic skeletons were specially selected to enhance topological and pharmacophore interaction with the target alpha-helix and beta-turn motifs.

Examples of Selected Scaffolds in the Library

Molecular properties

FOLLOW US

Contact us

I have read and agree with Privacy Policy of Enamine

Send me details