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RNA Library

Library of compounds capable of binding to RNA

8 960 compounds

The recent substantial progress in RNA biology underscores the importance of RNA in normal and aberrant cellular functions. RNA is essential for transcriptional regulation, translational regulation, protein function, and catalysis, responsibilities that have classically been reserved for proteins. It also highlights the potential of targeting RNA for treatment of a multitude of diseases including bacterial, viral infection and cancer.

We combined different in silico approaches to design optimum compound library focused to target RNA. The library has been plated for most convenient and quick access. Using our RNA targeted library you receive multiple benefits, allowing you to save on time and costs in hit expansion and optimization:

  • Analogs and hit samples resupply from dry stock of over 2.6 M compounds.
  • Straightforward & low-cost synthesis of follow-up libraries through our REAL Database technology
  • Medicinal chemistry support enhanced with on-site broad ADME/T panel

Most popular library formats available for immediate supply

Catalog No.
Compounds
Plates
Amount
Format
Price

Catalog No.

RNA-89-Y-0

Compounds

8 960

Plates

28

Amount

Up to 300 uL of 2 mM DMSO solutions

Format

384-well plates, 320 compounds per plate, 1,2 and 23, 24 columns empty

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Request a quote

Catalog No.

RNA-89-Y-10

Compounds

8 960

Plates

28

Amount

10 µL of 10 mM DMSO stock solutions

Format

384-well plates Greiner #781280, 320 compounds per plate, first two and last two columns empty

Request a quote

Request a quote

Catalog No.

RNA-89-X-50

Compounds

8 960

Plates

112

Amount

50 µL of 10 mM DMSO solutions

Format

96-well plates Greiner #650160, 80 compounds per plate, first and last columns empty

Request a quote

Request a quote

Please request for any other options through our contact form. We will be happy to deliver our library in any convenient for your project formats.

Library Design

RNAs can form well-defined secondary structures, such as double helices, hairpins, bulges, internal loop, stems, which offer structural basis for designing therapeutic agents. These structural features have been taken into account in the design of our RNA Targeted Library. We focused on compounds which bind to RNA, forming interactions with different types of secondary structures.

RNA Targeted Library
RNA Targeted Library

Examples of the molecules

Reference Set of active compounds has been collected from public sources/databases (ChEMBL, PubChem, Drugs.com and other), then filtered to remove non selective binders and compounds with reactive moieties. Similarity search (chemical fingerprints) was carried out against MedChem filtered Enamine in-stock collection, 2.6 M compounds, to yield subset of 400 molecule.

Pharmacophore search and Shape similarity search were used to enrich the library with new structures that can form same types of interaction as known ligand. Three 3D pharmacophore models were used for in silico screening based on the structure of most known binders. Additionally, substructure search was applied to find molecules bearing common structural moieties and cores known to be important for interaction with RNA (Inforna database was used for substructure selection).

The library comprises only drug-like compounds and provides an excellent basis for posttranscriptional gene regulation researches, antiviral and antibacterial drug discovery projects.

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